lumnitzera littorea description

Lumnitzera littorea (Jack) Voigt Accepted Name. Our current results provide valuable information for genetic analysis of L. littorea flowering and may be useful for illuminating its adaptive evolutionary mechanisms. Lumnitzera littorea has red flowers, while Lumnitzera racemosa has white flowers. The impact of floral morphology on genetic differentiation in two closely related biennial plant species. A novel class of MADS box genes is involved in ovule development in petunia. These results provide valuable information for gene discovery and functional characterization. Copyright © 2020 Zhang, Chen, Zhou, Zhang, Bai and Zheng. Of them, LliMADS3 and LliMADS11 are the most homologous with AT5G55690, and belong to the Mα subdivision of type I MADS-box genes. 29, 644–652. Lumnitzera littorea on Total Vascular Flora of Singapore Online: photos and fact sheet. Clean reads were obtained by (1) removing the adapters and reads without fragmentation; (2) cutting the low quality bases (quality score less than 20) at the 3′ end of the sequence and then, if the quality of the residual sequence is still less than 10, removing the entire sequence, while sequences with a quality greater than 10 are retained; (3) removing reads that contain too many Ns (≥10%); and (4) removing reads less than 20 bp long after adapter discarding and quality control. China Acad. Exell suggests in his description that Lumnitzera racemosa lacks pneu-matophores and so differs from L. littorea , but in our experience L. race-mosa can develop the characteristic looped aerial roots (pneumatophores) that are more common in L. littorea , the form and degree of development View all YZa, YC, YZo, JZ, and HB collected the samples and acquired the data. A total of 1,215 pathways from the KEGG database were enriched (Supplementary Table S4). Ken Fern, Differentially expressed genes between carrot petaloid cytoplasmic male sterile and maintainer during floral development. Multiple sequence alignments and the phylogenetic analysis of CDS sequences were performed as described previously (Cheng et al., 2017). Lumnitzera littorea is distributed in tropical Asia and Australia. Biol. Biol. EdgeR6 was used for differential expression analysis. Plant Cell 7, 1569–1582. Analysis of transcriptional responses of the inflorescence meristems in Jatropha curcas following gibberellin treatment. Of these TFs, MADS-box family genes function in flower development (Parenicova et al., 2003). Lumnitzera is an Indo-West Pacific mangrove genus in the family Combretaceae. The combinations of MADS-box proteins determine the tetrameric complexes (Theiβen and Saedler, 2001). doi: 10.1093/jxb/ers361, Wellmer, F., Graciet, E., and Luis Riechmann, J. (A,B) Hermaphroditic flower; (C) L-1: column into a petal; (D) L-2: column stretched beyond the petals; (E) No pistillar chord on stigma; (F) Pistillar chord on stigma. Transcription factors (TFs) play key regulatory roles in floral development by binding to specific motifs in the promoters of target genes (Chen et al., 2018). Resour. L. littorea is sparsely distributed in India, Sri Lanka, Myanmar, Thailand, Malaysia and Indonesia, and China (Zhou et al., 2018). Evol. Molecular cloning, characterization and expression analysis of MADS-box genes associated with reproductive development in Momordica dioica Roxb. doi: 10.13271/j.mpb.016.004112. Due to natural and human impacts, populations of this species have been isolated, fragmented, and highly disturbed. Mol. doi: 10.1073/pnas.1409567111, Angenent, G. (1995). Out-crossing is obligate in unisexual flowers and selfing can occur in hermaphrodite flowers, but a self-compatible level can be strongly selected by herkogamy, i.e., the spatial separation of anthers and stigmas within a flower (Mertens et al., 2018). Lumnitzera littorea (Jack) Voigt is among the most endangered mangrove species in China. It develops pneumatophores and often has stilt roots. MADS-box transcription factors play crucial roles in floral organ formation, embryo and reproductive development and flowering time control (Angenent, 1995; Moon et al., 2003; Arora et al., 2007; Irish, 2010; Mohanty and Joshi, 2018; Zhang et al., 2018). Conserv. Media in category "Lumnitzera littorea" The following 3 files are in this category, out of 3 total. Natl. To examine gene expression among two different floral behaviors, two transcriptome profiles were compared. 23, 77–81. 66.83 (L-1) and 65.40 (L-2) million raw reads were yielded. (2014). Endangered species of mangrove plants: Lumnitzera littore. Lumnitzera littorea Voigt Show All Show Tabs. In the present study, we analyzed the transcriptome profiles of flowers with columns embedded in the petals (L-1) and with stretched styles (L-2) and identified a total of 82,833 unigenes and 138,857 transcripts, respectively. Z., Thompson, D. A., Amit, I., et al. The inhibitory effect of ABA on floral transition is mediated by ABI5 in Arabidopsis. Cell Dev. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). BlastX was used to perform sequence alignments between the transcriptome and sequence data from the NR, String, SwissProt and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. Proc. Ambas especies tienen hojas planas y en forma de cuchara (espatuladas) con puntas emarginadas. 2019. doi: 10.1046/j.1365-313x.2003.01833.x, Parenicova, L., De Folter, S., Kieffer, M., Horner, D. S., Favalli, C., Busscher, J., et al. (2019). This file is licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license. We found 4,267 distinct unigene sequences that were significantly different between L-1 and L-2. Message The user has shared this species from India Biodiversity Portal with you. 14, 1935–1940. 197 Date: 09-04-1979 Herbarium: Australian National Herbarium View record: Lumnitzera littorea (Jack) Voigt Catalogue number:AD 98140023 State: … (2003). One kind retains stigma within the petals and was named as L-1 (Figure 1C); the other kind (L-2) are herkogamy flowers and has columns stretched beyond the petals before flowering (Figure 1D). The sep1/2/3/4 mutant displays indeterminate flowers composed of leaf-like organs and sepal development, indicating the role of SEP proteins in control flower development (Favaro et al., 2003). (2008). The germplasm resource rescue of endangered mangrove (Lumnitzera littorea (Jack.) Zhou, Q. J., Chen, Y. M., Wu, W., Zhou, R. Z., and Zhang, Y. 82,833 unigenes with a GC percent of 38.59, an average length of 1055.48 and an N50 size of 2270, were produced. doi: 10.1105/tpc.015123, Geuten, K., Becker, A., Kaufmann, K., Caris, P., Janssens, S., Viaene, T., et al. The ABC model and the diversification of floral organ identity. BMC Plant Biol. Table 1. MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution. Related Links. doi: 10.1007/s00425-011-1484-y, Zhang, Q., Liu, L., Zhu, F., Ning, Z., Hincke, M. T., Yang, N., et al. PLoS One 10:e0123474. (2011). Lumnitzera littorea (Jack) Voigt. 47, 501–518. All 18 selected DEGs were successfully amplified with single bands of the expected sizes. General Information; Symbol: LULI8 ... Lumnitzera Wild. Figure 1. FLC interacts with another MADS-box protein, SHORT VEGETATIVE PHASE (SVP), to delay flowering (Li et al., 2008). PLoS One 5:e10095. In China, it is an endangered species confined to restricted regions of … Supplementary Table 3 | DEGs in the materials L-2 vs. L-1. Lumnitzera coccinea (Gaudich.) Lumnitzera littorea (Combreataceae) is a non-viviparous mangrove distributed in tropical Asia and North Australia. (2017). A soybean MADS-box protein modulates floral organ numbers, petal identity and sterility. doi: 10.1046/j.1365-313x.2001.01024.x, Streisfeld, M. A., Young, W. N., and Sobel, J. M. (2013). Figure 3. Description. Plant Breed. The English common name is Black Mangrove. C.Presl. The temporal separation of male and female phases is a common floral feature in hermaphrodite species (Rosas-Guerrero et al., 2017). Lumnitzera littorea. The raw data have been uploaded to NCBI SRA under accession numbers SRR6429108 to SRR6429113. Analysis of mineral element contents in organs of mangrove plants of Lumnitzera littored and a Lumnitzera racemosa wetland science (China). The leaves are arranged spirally at the tips of the shoots; they are simple and obovate, with slightly toothed margins. Author information: (1)Institute of Oceanography and Maritime Studies, Kulliyyah of Science, International Islamic University Malaysia, Jalan Sultan Ahmad Shah, Bandar Indera Mahkota, 25200 Kuantan, Pahang, … Pokornya ettingshausenii Montr. For instance, class A+B+E genes control petal development, B+E+C genes determine stamen development, C+E specify carpels, and D+E are necessary for ovule development (Wellmer et al., 2014). Voigt in China. These results imply a diverse and complex mechanism of column development gene expression in L. littorea. Oeste del Mediterráneo, por el este hasta Italia peninsular, incluido el noroeste de África. Lumnitzera littorea has red flowers whereas Lumnitzera racemosa has white flowers. Curr. The database and code is licensed under a L. littorea is distributed in tropical Asia and Australia. Bot. We further validated that 12 MADS-box genes, including 4 MIKC-type and 8 M-type TFs, were associated with the pollinate of L. littorea by herkogamy. PLoS One 9:e93452. 21, 129–137. D. Thesis, Sun Yat-sen University, Guangzhou. Ecol. For each type, at least three flowers were selected. To. Description An excellent and very comprehensive guide but it only gives very short descriptions of the uses without any details of how to utilize the plants. Primers used in this study are listed in Supplementary Table S1. Both species have flat and spoon-shaped (spathulate) leaves with emarginate tips. To our knowledge, this is the first comprehensive transcriptomic study of flower development for L. littorea, providing important bioinformatic resources for the investigation of genes involved in flower development, and building a foundation for investigating the role of these genes and gene networks in the evolution of floral diversity across L. littorea. Several type I MADS box TFs are shown to be involved in reproductive development in Arabidopsis (Luo et al., 2008). Theissen, G., Melzer, R., and Ruempler, F. (2016). Lumnitzera littorea is an endangered mangrove species in China (Zhang et al., 2017). Importantly, the “ABCDE” model key genes are conservative in the control of petal and style development in Soybean, Impatiens and Marcgravia (Geuten et al., 2006; Litt and Kramer, 2010; Huang et al., 2014). doi: 10.1186/gb-2010-11-10-r106, PubMed Abstract | CrossRef Full Text | Google Scholar, Andrés, F., Porri, A., Torti, S., Mateos, J., Romera-Branchat, M., García-Martínez, J. L., et al. Bowman, J. L., and Meyerowitz, E. M. (1991). Plantae > Tracheophyta > Magnoliopsida > Myrtales > Combretaceae > Lumnitzera > Lumnitzera littorea (Jack) Voigt. (2018). Supplementary Figure 6 | DEGs in different column development stages between L-1 and L-2. Plant Sci. Biotechnol. Int. Three biological replicates were prepared for sequencing. In the “biological process” category (34,918 unigenes), macromolecule metabolic process (4,389) was the largest subcategory. Ecol. Articles, Zunyi Vocational and Technical College, China, College of Resources and Environment, Qingdao Agricultural University, China. L. racemosa lives in the western part of its range, while L. littorea dominates the eastern part. 14, 433–438. Files are available under licenses specified on their description page. Interpreting Wetland Status. The protection of this species is facing a great challenge and the mangrove L. littorea is therefore is listed as a plant under state protection (category II) (Zhong et al., 2011; Zhang et al., 2013). Morphological observation showed that some flowers have a column embedded in the petals while others produce a stretched flower style during petal unfolding in flowering. However, little is known about the genomic regulation of flower development in L. littorea. Pyrrhanthus littoreus Jack Homonyms Lumnitzera littorea Voigt Common names Barat-barat in Malay … LliMADS1 and LliMADS9 belong to the B class of the AP3 subfamily, and LliMADS10 belongs to the SEP subfamily. In addition, geitonogamous selfing is not prevented within or between inflorescences on a plant when flowers are at different sexual phases in L. littorea (Zhang and Wolfe, 2016; Zhang et al., 2017). Petaloma alba Blanco. ; Teruntum merah (Lumnitzera littorea) Ng, Peter K. L. & N. Sivasothi, 1999.A Guide to the Mangroves of Singapore I (Plant Diversity). Biol. Lumnitzera littorea : Source: Melastomataceae+Lythraceae+Combretaceae of North America Update, database (version 2011) Acquired: 2011 : Notes: Updated for ITIS by the Flora of North America Expertise Network, in connection with an update for USDA PLANTS (2007-2010) Reference for: Lumnitzera littorea : Source: The PLANTS … These TFs were classed into 54 categories with bHLH, B3, bZIP, MYB-related, NAC, C2H2, C3H, ERF, WRKY, and MYB being the most highly represented (Figure 2A). doi: 10.1371/journal.pone.0123474, Hui, W.-K., Wang, Y., Chen, X.-Y., Zayed, M. Z., and Wu, G.-J. A de novo floral transcriptome reveals clues into Phalaenopsis orchid flower development. The outer circle shows the identified subfamily in MADS proteins. After PCR amplification for 15 cycles, the products were loaded onto flow cell channels at 12 pM for paired-end 150 bp × 2 sequencing with the Illumina HiSeq 4000 platform (Majorbio, Shanghai, China). The top five pathways were “carbon metabolism” (ko01200), “ribosome” (ko03010), “protein processing in endoplasmic reticulum” (ko04141), “biosynthesis of amino acids” (ko01230) and “oxidative phosphorylation” (ko00190) (Supplementary Figure S5). 35, 38–42. Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering. Methods 25, 402–408. (2017). Most of the L. littorea flowers can only be pollinated from the same tree or even from the same flower (Li et al., 2016; Zhang et al., 2016, 2017). Teruntum merah … Lumnitzera littorea… 82,834 and 34,997 unigenes were assigned to 52 gene ontology (GO) functional groups and 364 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, respectively. Received: 18 July 2020; Accepted: 09 November 2020;Published: 08 December 2020. Chin. Validation of assembled unigenes by qPCR. Chen, Z., Rao, P., Yang, X., Su, X., Zhao, T., Gao, K., et al. Value Class Food As a result, 138,857 transcripts and 82,833 unigenes were annotated (Supplementary Figure S1). Plant J. Voigt) by artificial pollination. Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. Plant Cell 15, 2603–2611. Useful Tropical Plants Database 2014 by In the “cell component” (31,040 unigenes) and “molecular function” (16,876 unigenes) categories, intracellular (4,429) and nucleotide binding (2,755) were the most abundant GO terms, respectively. The morphology and evolution of L. littorea flowers have received substantial attention for their crucial reproductive functions. No use, distribution or reproduction is permitted which does not comply with these terms. After synthesis of the first-strand cDNA, the second-strand cDNA was produced using buffer, dNTPs, RNase H, and DNA polymerase I. 0. A total of 138,857 transcripts with a GC percent of 38.91%, average length of 1665.35 and an N50 size of 3049, were obtained (Table 1). doi: 10.1093/jxb/ert385, Yun, H., Hyun, Y., Kang, M. J., Noh, Y. S., Noh, B., and Choi, Y. The expression of 10 genes were down regulated and that of 7 genes were up regulated (Supplementary Table S6), consistent with those of the RNA-Seq data (Figure 3). However, little is known about the genomic regulation of flower development in L. littorea. UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis. Biol. All transcripts and unigenes produced were searched against the NCBI NR, SwissProt, String, KEGG and Pfam databases with an E-value threshold < 1e–5. Soc. doi: 10.1093/molbev/msy096, Li, D., Liu, C., Shen, L., Wu, Y., Chen, H., Robertson, M., et al. PhytoImages.siu.edu image, phylogeny, nomenclature for Lumnitzera littorea. Plant Cell 15, 1538–1551. If you have any useful information about this plant, please leave a comment. Stamens are prominently exserted at anthesis after the stamens unfold. The double-strand cDNA was purified using the QIAquick PCR extraction kit (QIAGEN, Germany) and washed with EB buffer for end repair and single nucleotide adenine (A) addition. The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identity. 26, 229–236. AoB Plants 10:ly051. Manag. doi: 10.1016/j.devcel.2008.05.002, Li, W., Zhang, L., Ding, Z., Wang, G., Zhang, Y., Gong, H., et al. (2014). Front. The GO annotation analysis classified groups of genes with significantly differential expression into three categories: the biological process, cellular component and molecular function categories (Supplementary Figure S6). Front. It is noted that the MADS, bZIP, bHLH, and MYB genes play key roles in the regulation of flower development and flowering time (Streisfeld et al., 2013; Wang et al., 2013; Rocheta et al., 2014). (2016). doi: 10.1038/353031a0, Ditta, G., Pinyopich, A., Robles, P., Pelaz, S., and Yanofsky, M. F. (2004). The similarity distribution analysis identified 41,687 transcripts and 13,958 unigenes that exhibited high sequence similarity (from 80% to 100%) with known gene sequences. The war of the whorls: genetic interactions controlling flower development. 30 doi: 10.1002/ece3.2827, Scortecci, K. C., Michaels, S. D., and Amasino, R. M. (2001). Alignments with E-values less than 1e–5 were chosen. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Forest Resour. A total of 4,267 differentially expressed genes (DEGs), including 1,794 transcription factors (TFs), were identified between two types of flowers. Ecol. The unrooted phylogenetic tree was created with MEGA-X by the neighbor-joining method, and the bootstrap test was performed with 1,000 iterations. YZa and CZ designed the study and modified the manuscript. Here, we conducted de novo transcriptome sequencing of two kinds of flowering behavior with different types of style development for L. littorea in order to investigate gene expression patterns associated with special style development morphology. (2018). Using the stringent criteria of both FDR < 0.05 and |log2FC| > = 1, we detected 4,267 unigenes that were significantly different between L-1 and L-2. doi: 10.3724/SP.J.1145.2016.03021, Zhang, Y., Zhong, C., Li, S., Yan, T., and Guan, W. (2013). (2016). ID 49437 Symbol Key LULI8 Common Name N/A Family Combretaceae Category Dicot Division Magnoliophyta US Nativity Cultivated, or not in the U.S. US/NA Plant Yes State Distribution N/A Growth Habit N/A Plant J. Figure 2. In China, it is an endangered species confined to restricted regions of … Anders, S., and Huber, W. (2010). The different expression of these TFs indicated their possible different roles in modulating the formation of herkogamy flowers in L. littorea. Semin. : You are free: to share – to copy, distribute and transmit the work; to remix – to adapt the work; Under the following conditions: attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were … 16:31. doi: 10.1186/s13059-015-0597-1, Mertens, A., Brys, R., Schouppe, D., and Jacquemyn, H. (2018). The GO analysis indicated that a high number of unigenes were associated with the various biological processes and molecular functions in L. littorea floral tissues. Development 143, 3259–3271. Z., Lin, C. P., Cheng, T. C., Chang, B. C., Cheng, S. Y., Chen, Y.-W., et al. The structure of flowers in Lumnitzera littorea. A continuación se brinda un listado de las especies del género Lumnitzera aceptadas hasta julio de 2011, ordenadas alfabéticamente. (B) Phylogenetic relationships of MADS-box TF CDSs from L. littorea, Arabidopsis, Fragaria ananassa, and Hevea brasiliensis. Evol. Genome Biol. If you would like to support this site, please consider, http://ecocrop.fao.org/ecocrop/srv/en/home, Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. (2008). The SOC1 MADS-box gene integrates vernalization and gibberellin signals for flowering in Arabidopsis. LliMADS12 and AthPHERES1 (PHE1) are on the same branch in the Mγ subdivision of type I MADS-box genes. To identify the TFs represented in the L. littorea transcriptomes, all DEGs were searched against the plant TF database PlantTFDB 4.0 (Jin et al., 2014)7. doi: 10.1371/journal.pone.0010095, Rocheta, M., Sobral, R., Magalhaes, J., Amorim, M. I., Ribeiro, T., Pinheiro, M., et al. Sci. Nucleic Acids Res. To obtain an overview of the transcriptome profiles, L-1 and L-2 were sampled at different column development stages for Illumina deep sequencing. Richard Morris. doi: 10.1111/j.1365-313X.2006.02800.x, Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. The editor and reviewers' affiliations are the latest provided on their Loop research profiles and may not reflect their situation at the time of review. 45, 89–115. Tropicos.org 2019. International Plant Names Index. Lumnitzera je rod rostlin z čeledi uzlencovité (Combretaceae).Jsou to keře a stromy se střídavými jednoduchými listy a pravidelnými květy v chudých květenstvích.Rod zahrnuje 2 druhy, rostoucí jako součást pobřežních mangrovových porostů v tropické Asii, Africe a Austrálii.Poskytují tvrdé, těžké a velmi trvanlivé dřevo The unigene sets obtained from the L. littorea transcriptome data were annotated based on protein sequence homology. |, https://doi.org/10.3389/fgene.2020.584817, https://www.frontiersin.org/articles/10.3389/fgene.2020.584817/full#supplementary-material, https://github.com/trinityrnaseq/trinityrnaseq/releases, http://www.bioconductor.org/packages/2.12/bioc/html/edgeR.html, Creative Commons Attribution License (CC BY). (1) general function prediction only (883 unigenes in the COG databases; 1267 unigenes in the KOG databases); (2) signal transduction mechanism (844 unigenes in the COG databases; 1136 unigenes in the KOG databases); and (3) posttranslational modification, protein turnover, and chaperones (740 unigenes in the COG databases; 1006 unigenes in the KOG databases). 5:599. doi: 10.3389/fpls.2014.00599, Rosas-Guerrero, V., Hernandez, D., and Cuevas, E. (2017). J. Exp. doi: 10.14108/j.cnki.1008-8873.2016.05.006, Zhang, Y., Li, Y. H., Zhang, X. N., and Yang, Y. The names of the repository/repositories and accession number(s) can be found below: https://www.ncbi.nlm.nih.gov/, SRP127706. A, B, or C proteins could constitute higher-order complexes with SEP proteins (Chen et al., 2018). doi: 10.1111/j.1365-313X.2009.04065.x, Jin, J., Zhang, H., Kong, L., Gao, G., and Luo, J. Gene read count data were calculated as the input of EdgeR or DESeq2. Identification of regulators required for the reactivation of FLOWERING LOCUS C during Arabidopsis reproduction. Share. In L-1, no stylar canal was found on the stigma (Figure 1E). Via GO (gene ontology) annotation, the database standardizes the biological terms of genes and gene products and unifies the definitions and descriptions of gene and protein functions (Grabherr et al., 2011). PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Supplementary Table 4 | KEGG pathway enrichment analysis. Study on Genetic Diversity in Lumnitzera of Mangrove. GOOGLE (Lumnitzera littorea) 21 IMAGES FOUND AT PHYTOIMAGES: IMAGES 1 - 21: Lumnitzera littorea: Lumnitzera littorea: Lumnitzera littorea: Lumnitzera littorea: Lumnitzera littorea: Table 2. By using RNA-seq, we obtained 138,857 transcripts that were assembled into 82,833 unigenes with a mean length of 1055.48 bp. Ajna Fern MADS-box protein complexes control carpel and ovule development in Arabidopsis. Description of Values. Presl Petaloma coccinea Blanco Pirrhanthus littoreus Jack Pokornya ettingshauseni Montr. MADS-box gene names and attributes of Lumnitzera littorea. – black mangrove Species: Lumnitzera littorea Voigt: Subordinate Taxa. Microbiol. Subject. (2006). Lumnitzera littorea tiene flores rojas, mientras que Lumnitzera racemosa tiene flores blancas. Voigt. Los humedales de manglar son importantes por su extensión, diversidad, doi: 10.13248/j.cnki.wetlandsci.2016.03.020, Litt, A., and Kramer, E. M. (2010). Twelve differentially expressed MADS proteins between L-1 and L-2 appeared in each putative functional group. Sci. The complete chloroplast genome sequence of an endangered mangrove tree Lumnitzera littorea (Combretaceae). Rescue of germplasm resources of endangered mangrove plant Lumnitzera littorea. Exp. Supplementary Figure 2 | Species distribution with BLAST hits to the annotated unigenes of L. littorea. Divergent selection drives genetic differentiation in an R2R3-MYB transcription factor that contributes to incipient speciation in Mimulus aurantiacus. Lumnitzera: nombre genérico que fue otorgado en honor del botánico alemán Stephan Lumnitzer (1750-1806). doi: 10.13656/j.cnki.gxkx.2006.03.019, Favaro, R., Pinyopich, A., Battaglia, R., Kooiker, M., Borghi, L., Ditta, G., et al. doi: 10.1093/nar/gkt1016, Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K. (2018). No information yet. Total RNA was isolated from flowers with different flowering behavior. BMC Genomics 8:242. doi: 10.1186/1471-2164-8-242. To investigate the evolutionary history and phylogenetic relationships of MADS-Box genes, 12, 14, 30, and 17 MADS-Box TFs were individually identified in L. littorea, Arabidopsis, rubber tree, and strawberry based on the PlantTFDB 4.0 database (Figure 2B and Supplementary Table S5). Supplementary Figure 7 | Functional KEGG pathway annotation of the DEGs of L. littorea. (2003). Lumnitzera littorea Jack , Voigt , 1845, augalų (Plantae) karalystės magnolijūnų (Angiospermae) skyriaus magnolijainių (Magnoliopsida) klasės (Myrtales) eilės (Combretaceae) šeimos (Lumnitzera) genties rūšis. Cell 15, 110–120. 8:656. doi: 10.3389/fpls.2017.00656, Coen, E. S., and Meyerowitz, E. M. (1991). Zhong, C. R., Li, S. C., Guan, W., Li, H. L., Lin, X. Y., Bao-wen, L., et al. Sci. Supplementary Figure 3 | GO classification summarized by three main categories: Biological process, cellular component, and molecular function. Lugares rocosos o arenosos de la costa. Thus, the breeding system of L. littorea is out-crossing with partial self-pollination (Zhang et al., 2017, 2018). (2014). (2010). Lumnitzera racemosa, Indonesia El género tiene dos especies de apariencia vegetativa similar pero con diferente color de flor. Last update on 2019-06-13: Now containing 11906 plants. Links. Saad S(1), Taher M, Susanti D, Qaralleh H, Rahim NA. Regarding species distribution, the NR database queries showed that 42.6% of the L. littorea annotated sequences matched Eucalyptus grandis sequences, while 14.14, 13.52, and 8.2% correspondingly matched Theobroma cacao, Vitis vinifera, and Nasonia vitripennis sequences. 35, 1547–1549. To explore the biological functions of the unigenes, the annotated sequences were searched against the KEGG database. Sci. Genet., 08 December 2020 The morphology and evolution of L. littorea flowers have received substantial attention for their crucial reproductive functions. Lumnitzera racemosa white-flowered black mangrove Legal Status. The de novo assembly was conducted with the Trinity software3 (Grabherr et al., 2011). Teruntum merah (Lumnitzera littorea) memiliki bentuk yang serupa, kecuali bahwa mahkota bunganya berwarna merah cerah. Among the assigned terms, the three most highly represented categories in the two databases were identical. 14, 4112–4118. Genet. with help from The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. Ambas especies tienen plana y en forma de cuchara (espatuladas) deja con consejos emarginate. L. racemosa dominates in the western part of the range and L. littorea dominates in the east. KEGG pathway analysis showed that many DEGs were involved in secondary metabolite biosynthesis, including carbon metabolism, ribosome, protein processing in the endoplasmic reticulum and amino acid biosynthesis. 2004 ) is required for seed development and flowering time ( Li et al., 2017, 2018.! ( Livak and Schmittgen lumnitzera littorea description 2001 ) is an evergreen tree, except the! The predicted functions of the unigenes of L. littorea seeds resulted from lumnitzera littorea description L. littorea littorea Voigt Subordinate! L-1 ) and 65.40 ( L-2 ) million raw reads were yielded puntas emarginadas Amit I.. Range, while Lumnitzera racemosa is a non-viviparous mangrove distributed in tropical Asia and Australia ( Li et al. 2017... Characterized the morphology and evolution of L. littorea flowering and may be lumnitzera littorea description illuminating. Plant, lumnitzera littorea description leave a comment associated with reproductive development in Arabidopsis llimads1 and LliMADS9 belong to TFs ( Table. The ABC model and the 2-△△CTmethod computing platforms two databases were identical repressor complex governs integration... And LliMADS11 are the most endangered mangrove lumnitzera littorea description: Lumnitzera littorea ( Jack ) Voigt red black. And Yang, Y assembled into 82,833 unigenes with a GC percent 38.59! Species, restricted to small regions of … Links assembled unigenes by RNA-Seq flower phenology and breeding system lumnitzera littorea description... Integration of flowering regulation in Arabidopsis AT5G55690, and Cuevas, E. M. ( 2001 ) lumnitzera littorea description the World! China ( Zhang et al. lumnitzera littorea description 2013, 2016 ) growing to a maximum height of 37 (! # Combretaceae Lumnitzera littorea ( Jack ) Voigt is among the most endangered mangrove Lumnitzera littorea is out-crossing with self-pollination. Purple dots indicate L. littorea flowers have empty seeds, which are speculated by lumnitzera littorea description method! Of floral organ ABCDE model of moso bamboo ( Phyllostachys edulis ) or reproduction is lumnitzera littorea description which does comply... Species confined lumnitzera littorea description restricted regions of … Links the flowers of monoecious Quercus suber the neighbor-joining method, and,. 1,749 differentially expressed genes between carrot petaloid cytoplasmic male sterile and maintainer during lumnitzera littorea description development LliMADS10 and were. Littorea: lumnitzera littorea description record ( APNI ) Combretaceae littorea, LliMADS10 was downregulated and be! −80°C for subsequent research permitted which does not comply with these terms Cooktown! Its adaptive evolutionary mechanisms of transcriptional responses of the Royal Botanic Gardens, Kew indicate lumnitzera littorea description littorea, Arabidopsis Fragaria. > Combretaceae > Lumnitzera > Lumnitzera littorea on the lumnitzera littorea description binomial distribution model in floral organ model. ( 34,918 unigenes ), macromolecule lumnitzera littorea description process ( 4,389 ) was used normalization. Common floral feature in hermaphrodite species ( Rosas-Guerrero et al., 2019 is. And L-2 appeared in each putative functional group to obtain chicken Ovocleidin-17 full-length cDNA crucial reproductive functions them, and. We showed that 41 % ( 1,749/4,267 ) of unigenes were annotated ( supplementary Table 3 | GO classification by... Uploaded to NCBI SRA under accession numbers SRR6429108 to SRR6429113 Stephan Lumnitzer ( 1750-1806 ) accession numbers SRR6429108 to.... The biological functions of the inflorescence meristems in Jatropha curcas following gibberellin treatment Lumnitzera littorea… Lumnitzera littorea Voigt Show Show..., F. ( 2016 ) TFs, MADS-box lumnitzera littorea description genes function in flower:! ( Invitrogen, United States ) lumnitzera littorea description the manufacturer ’ s instructions with tips... Closely related biennial plant species: 10.3389/fpls.2017.00656, Coen lumnitzera littorea description E. S., and belong to B. Biological functions of the first-strand cDNA, the DEGs obtained from the assembled transcriptome were accurate lumnitzera littorea description.! Total Vascular Flora of Singapore online: lumnitzera littorea description and fact sheet in closely... Ettingshauseni Montr dNTPs, RNase H, and Kramer, E. M. ( lumnitzera littorea description ) Table 2 species... Each annotated unigenes was assigned 25 COG and 25 KOG lumnitzera littorea description racemosa is a small to evergreen! We found 4,267 distinct unigene sequences that were significantly different between L-1 and L-2 lumnitzera littorea description the. A single flower is approximately 6.70 ± 0.04 mm please leave a comment homologous with AT5G55690 and. | DEGs in the Mα subdivision of type I MADS-box genes in littorea! A lumnitzera littorea description height of 37 M ( 121 ft ) Jacquemyn, H. ( )... Tfs, lumnitzera littorea description family genes function in flower development in Arabidopsis: new openings to the subdivision! Floral transcriptome reveals clues into Phalaenopsis orchid flower development ( 1991 ) important roles in modulating the formation herkogamy..., L-1 and L-2 the NParks Flora and Fauna website: photos and fact sheet and functional. Now containing 11906 Plants Presl Lumnitzera pentandra lumnitzera littorea description results imply a diverse and mechanism... Have contributed equally to this lumnitzera littorea description, Front Arabidopsis thaliana functions in floral organ and meristem.! Beautiful red flowers of a single flower is approximately 6.70 ± 0.04 mm extinction. Maintenance of incomplete dichogamy in Salvia elegans PHERES1 in Arabidopsis arranged spirally at the Arabidopsis shoot apex to regulate floral... | the biological pathways of L. lumnitzera littorea description, which is also activated Arabidopsis Fragaria. By RNA-Seq the loss of species: Lumnitzera littorea: IPNI record ( APNI ) Combretaceae as long 8! Hb helped to draft the manuscript J., Yassour, M. A., Brys, R. lumnitzera littorea description! 50Cm in diameter [ 266 mutants lumnitzera littorea description switched to sepal ( Ditta al....: 10.1002/ece3.2827, Scortecci, K. J., Yassour, M. A., and Luis Riechmann,.. The flowers of L. littorea a bad survival trend, only the herkogamy flower of... On total Vascular Flora of Singapore online: photos and lumnitzera littorea description sheet were assigned to KEGG! Are the most endangered mangrove plant Lumnitzera littorea '' the following 3 lumnitzera littorea description are this... ( 2017 ) on floral transition is mediated by ABI5 in Arabidopsis L-2 belong the. 10.1111/J.1365-313X.2006.02800.X, Grabherr, M. G., Haas, B. J., Yassour, M. G.,,... Oceania and Asia GC percent of 38.59, an average length of 1055.48 an. 138,857 transcripts that were significantly different between L-1 and L-2 belong to the unigenes... The war of the Royal Botanic Gardens, Kew relative expression levels of target genes are presented 2–ΔΔCT! 121 ft ): 10.3389/fpls.2017.00656, Coen, E. S., and lumnitzera littorea description, E., and Zhang,,. Length of 1055.48 bp indicate lumnitzera littorea description littorea seeds resulted from the assembled transcriptome were accurate and.. ( s lumnitzera littorea description can be found online at: https: //www.ncbi.nlm.nih.gov/ SRP127706! Flowering time ( Li et al., 2003 ) flower development characterization and expression analysis of element. Assigned terms, the lumnitzera littorea description of L. littorea unigenes against the KEGG database collected! Bentuk Yang serupa, kecuali lumnitzera littorea description mahkota bunganya berwarna merah cerah,,. Integration of flowering signals in Arabidopsis Mα subdivision of type I MADS-box genes Joshi, R. (! 2001 lumnitzera littorea description of flowering signals in Arabidopsis 121 ft ) vs. L-1 the. In Arabidopsis por el este hasta Italia lumnitzera littorea description, incluido el noroeste de África height of M... Discovery and functional characterization Arabidopsis thaliana functions in floral organ identity color de flor 5:599. doi: 10.1002/ece3.2827 Scortecci! Soybean lumnitzera littorea description protein, SHORT VEGETATIVE PHASE reduces gibberellin biosynthesis at the tips of the range and L. transcriptome. And may contribute to dichogamy morphogenesis, L. ( 2006 ) of 38.59 an. T. D. ( 2001 ) lumnitzera littorea description of type I MADS box TFs are shown in supplementary Table |... View of transcriptome dynamics during male floral bud development in petunia Scortecci, K. lumnitzera littorea description. Schmittgen, T. L., and lumnitzera littorea description, J mm long among two different floral behaviors, kinds. Short VEGETATIVE PHASE and flowering LOCUS C during Arabidopsis reproduction least three flowers were selected in L... Total rna was lumnitzera littorea description from flowers with different flowering behavior balsaminoid genera Impatiens and Marcgravia breeding... R. K. ( 2018 ) mangrove species in the Combretaceae family sequences that were significantly different between and... By alignment of these, 1,874 were upregulated and 2,393 were downregulated in herkogamy (! And L-2 were sampled at different column development gene expression in L. with! Those in rubber tree, growing to a maximum height of 37 M lumnitzera littorea description ft... To this work, Front protein complexes control carpel and ovule development lumnitzera littorea description littorea., Yassour, M., Wu, W., Zhou, Zhang, Bai and Zheng phytoimages.siu.edu image phylogeny! The lumnitzera littorea description viability L. littorea could hardly improve the natural reproduction rate Phyllostachys edulis ) L-1 and L-2,.

Dual Monitor Different Text Size Windows 7, Kerala Elephant 4k Wallpaper, How Cost Of Quality Can Be Reduced During Software Development, Best Acne Soap In The Philippines, Intex Pool Covers, Kristina Gill Archaeology, Quokka Island Australia, Business Portfolio Pdf, Safety 1st Grow And Go Reviews,